Prep the oven and pan: Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or lightly grease it.
Grate the zucchini: Using the small holes of a box grater, grate the zucchini. Lightly squeeze by the handful to remove only excess drip, not every drop.
You want it moist, not soggy.
Mix dry ingredients: In a large bowl, whisk flour, protein powder, cocoa powder, baking soda, baking powder, salt, and cinnamon until no clumps remain.
Whisk wet ingredients: In a separate bowl, whisk eggs, oil, maple syrup, yogurt, and vanilla until smooth. Stir in the grated zucchini.
Combine: Pour wet ingredients into the dry. Stir gently with a spatula until just combined.
If the batter looks very thick (like cookie dough), add milk 1 tablespoon at a time until it looks like thick muffin batter.
Add chocolate: Fold in the chocolate chips, saving a few for the tops if you like.
Fill the cups: Divide batter evenly among the muffin cups, filling each about 3/4 full. Sprinkle reserved mini chips on top.
Bake: Bake for 16–20 minutes, or until a toothpick inserted in the center comes out with a few moist crumbs but no wet batter.
Cool: Let muffins cool in the pan for 5 minutes, then move them to a wire rack to finish cooling. This helps them set and stay tender.
Enjoy: Serve warm or at room temperature.
The chocolate flavor deepens after a few hours.