Preheat and prep: Heat your oven to 350°F (175°C).
Line a 12-cup muffin pan with paper liners or spray lightly with nonstick.
Mix wet ingredients: In a large bowl, whisk pumpkin puree, eggs, applesauce, milk, vanilla, and sweetener until smooth.
Combine dry ingredients: In a separate bowl, whisk flour, protein powder, baking powder, salt, and pumpkin pie spice.
Bring it together: Add dry ingredients to wet. Stir gently with a spatula until just combined. The batter should be thick but scoopable.
If it’s too stiff, add 1–2 tablespoons of milk.
Portion: Divide batter evenly among the 12 muffin cups. They should be about 3/4 full. Add a few mini chips or pepitas on top if using.
Bake: Bake for 14–18 minutes, or until a toothpick comes out mostly clean with a few moist crumbs.
Don’t overbake—protein muffins dry out quickly.
Cool: Let muffins rest in the pan for 5 minutes, then transfer to a wire rack to cool completely. This helps them set and stay tender.
Taste test: Try one warm. If you prefer more sweetness or spice next time, adjust to taste—this recipe is very forgiving.