Preheat your oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or grease it well.
In a large bowl, whisk together 1 1/4 cups all-purpose flour, 3/4 cup protein powder, 2 tsp baking powder, 1/2 tsp baking soda, 1/2 tsp salt, and 1/2 tsp cinnamon.
This prevents clumps and helps the protein powder distribute evenly.
In a separate bowl, whisk 2 large eggs, 3/4 cup plain Greek yogurt, 1/2 cup milk, 1/3 cup light brown sugar, 2 tbsp honey or maple syrup, 1/4 cup oil or melted butter, and 1 1/2 tsp vanilla until smooth.
Pour the wet ingredients into the dry. Stir with a spatula until just combined. The batter should be thick but scoopable. Do not overmix; a few small streaks of flour are fine.
Gently fold in 1 1/2 cups mixed berries.
If using strawberries, chop them into blueberry-sized pieces. If using frozen berries, do not thaw; toss them in a teaspoon of flour to reduce bleeding.
Optional: Fold in 1 tsp lemon zest for brightness.
Divide the batter evenly among the muffin cups, filling them just to the top. Sprinkle with a pinch of coarse sugar if you like a light crunch.
Bake for 16–20 minutes until the tops are set and lightly golden, and a toothpick comes out with a few moist crumbs (avoid testing a berry pocket).
Cool in the pan for 5 minutes, then transfer to a rack to cool completely.
This helps set the structure and keeps liners from sticking.