Preheat and prep: Heat your oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or lightly grease each cup.
Whisk dry ingredients: In a large bowl, whisk 1 1/4 cups flour, 1/2 cup protein powder, 2 teaspoons baking powder, 1/4 teaspoon baking soda, and 1/2 teaspoon salt.
Zest 1 lemon directly into the bowl and toss to combine. If your protein clumps, sift it first.
Mix wet ingredients: In a separate bowl, whisk 2/3 cup Greek yogurt, 1/2 cup milk, 2 large eggs, 1/3 cup oil, 1/2 cup sugar, 1 teaspoon vanilla, and 1–2 tablespoons fresh lemon juice. Aim for a smooth mixture without overbeating.
Combine gently: Pour wet into dry and fold with a spatula until just combined.
The batter should be thick but scoopable. If it’s too stiff, add 1–2 tablespoons milk.
Fold in blueberries: Toss 1 to 1 1/4 cups blueberries with 1 teaspoon flour to prevent sinking, then gently fold into the batter. Avoid overmixing to keep the crumb tender and the berries intact.
Fill the tin: Divide batter evenly among the muffin cups, filling each about 3/4 full.
For a bakery-style dome, you can slightly mound the centers. Sprinkle a little coarse sugar on top if you like.
Bake: Bake 16–20 minutes, until the tops are set and a toothpick in the center comes out with a few moist crumbs. If using frozen berries, add 1–2 minutes.
Cool: Let muffins rest in the pan 5 minutes, then transfer to a rack to cool completely.
This sets the structure and prevents sogginess.
Finish with lemon (optional): While warm, brush lightly with a mix of 1 tablespoon lemon juice and 1 teaspoon honey for a subtle glaze and extra brightness.